The role

We are seeking a skilled data scientist or image analyst with expertise in developing image analysis pipelines and software solutions to join our R&D team. The successful candidate will focus on the development and optimization of our image analysis pipeline, transforming raw microscope images into high-quality, quantitative biological data.

Working closely with the software team, this role will also contribute to enhancing Hyperplex PCR™ assays by refining how numerical results and quality metrics are visualized, ensuring a seamless, intuitive, and user-friendly software experience. The position is ideal for an action-driven problem solver who thrives in a fast-paced start-up environment and enjoys working at the intersection of data science, software development, and molecular diagnostics.

Responsibilities

• Develop and refine image analysis modules to extract reproducible, quantitative results from microscopy images, including tasks such as 2D/3D feature segmentation, signal intensity analysis, spectral unmixing, and deconvolution.
• Conduct systematic performance evaluations of image analysis pipelines and develop quality control metrics for datasets and experiments.
• Automate and optimize software pipelines to improve computational efficiency, robustness, and scalability in high-throughput environments.
• Design and integrate user-friendly interfaces (UI) for seamless interaction with image analysis tools and visualization of experiment results, including figures, tables, plots and images.
• Maintain rigorous documentation of algorithms, software components, and experimental workflows.
• Work closely with the R&D, bioassay, and service teams to balance performance and quality between assays and image analysis.
• Maintain project timelines, document results, and communicate findings effectively.
• Contribute to risk management activities to ensure smooth project execution.

Skills & Requirements

We’re looking for a candidate with a strategic mindset, action-driven approach, and the ability to thrive in a fast-paced and agile environment. This individual should possess meticulous attention to detail and a proactive approach to achieving project milestones, as well as the flexibility to adapt to evolving methods. The ideal candidate can communicate effectively at all organizational levels, build strong relationships with customers, and demonstrate a genuine passion for enabling new technologies with software. The candidate does not need to be proficient in biology, chemistry of physics, but preferably enjoys to learn about these subjects.

Required:

• MSc or PhD in Computer Science, Bioinformatics, Biomedical Engineering, Applied Mathematics, or a related field.
• Proficiency in Python and relevant libraries such as OpenCV, scikit-image, NumPy, and SciPy.
• Strong skills in data visualization, statistical analysis, and quality control.
• Strong written and verbal communication skills in English.
• Valid work authorization for Sweden.

Preferred:

• Strong proficiency in Python and key scientific libraries, including NumPy, scikit-image, scikit-learn, and OpenCV.
• Skilled in statistical analysis, including data classification, regression, and clustering.
• Proficient in data visualization using tools such as HoloViz, Plotly, Matplotlib or equivalent
• Experience in GPU programming for high-performance image processing applications.
• Expertise in deep learning model development, including architecting, training, and fine-tuning models for object detection and semantic segmentation.
• Hands-on experience with Docker and Kubernetes for containerization and orchestration.
• Industry experience in software development, with a focus on life sciences and medical applications, including UI development utilizing D3.js, Vue.js, React.js, or similar technologies .
• Strong expertise in image processing and analysis, particularly in fluorescence microscopy.
• Experience in bioinformatics, molecular diagnostics, or in situ analysis.

What we offer

• An ambitious, innovative, inclusive and professional environment.
• Being part of building a cross-disciplinary technology at the frontier of its space.
• Primarily working on-site rather than remote to interact heavily with the R&D and Product teams.
• Nordic level salary with 5 weeks annual paid vacation.
• Stock option program.

Terms of employment

This is a 1 year full-time salary position available immediately, that can lead to full-time employment. The position is based on site in Aplex Bio’s facility on KI campus.

Application

Apply through: https://emp.jobylon.com/jobs/261709-aplex-bio-data-scientist-image-analysis-software-development/